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SRX033260: Whole Exome sequencing for the 1000 Genomes Project
120 ILLUMINA (Illumina HiSeq 2000) runs: 120M spots, 17.3G bases, 9.7Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection
Submitted by: Broad Institute (BI)
Study: Exome sequencing of (CLM) Colombia from Medellin, Colombia HapMap population
PRJNA60133 • SRP004070 • All experiments • All runs
Samples: pool of 15 samples • Homo sapiens
Library:
Name: Solexa-42316
Instrument: Illumina HiSeq 2000
Strategy: WXS
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Spot descriptor:
1  forward barcode77  reverse

Experiment attributes: (show all 6 attributes...) (hide...)
EXPECTED_BASECALL_TABLE: match_edge="full" max_mismatch="1" min_match="7" r (show full text...)(hide...)
match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_934" member_name="tagged_934_TTAATCAG" TTAATCAG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_534" member_name="tagged_534_CTGCGGAT" CTGCGGAT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_635" member_name="tagged_635_GCAGCCGT" GCAGCCGT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_289" member_name="tagged_289_ATTATGTT" ATTATGTT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_293" member_name="tagged_293_ATTCTAGG" ATTCTAGG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_800" member_name="tagged_800_TACTTAGC" TACTTAGC match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_924" member_name="tagged_924_TGTAATCA" TGTAATCA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_220" member_name="tagged_220_AGGTCGCA" AGGTCGCA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_422" member_name="tagged_422_CCTACCAT" CCTACCAT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_747" member_name="tagged_747_GTCCACAG" GTCCACAG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_288" member_name="tagged_288_ATTATCAA" ATTATCAA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_938" member_name="tagged_938_TTACGCAC" TTACGCAC match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_509" member_name="tagged_509_CTATGCGT" CTATGCGT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_754" member_name="tagged_754_GTCTGATG" GTCTGATG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_498" member_name="tagged_498_CGTTACCA" CGTTACCA
5 BI attributes: (show...)(hide...)
BI GSSR sample IDs: 65652.0, 65653.0, 65654.0, 65655.0, 65656.0, 65657.0, 65658.0, 65659.0, 65660.0, 65661.0, 65662.0, 65663.0, 65664.0, 65665.0, 65666.0
BI GSSR sample LSIDs: broadinstitute.org:bsp.prod.sample:1D9W7, broadinstitute.org:bsp.prod.sample:1D9W8, broadinstitute.org:bsp.prod.sample:1D9W9, broadinstitute.org:bsp.prod.sample:1D9WA, broadinstitute.org:bsp.prod.sample:1D9WB, broadinstitute.org:bsp.prod.sample:1D9WC, broadinstitute.org:bsp.prod.sample:1D9WD, broadinstitute.org:bsp.prod.sample:1D9WE, broadinstitute.org:bsp.prod.sample:1D9WF, broadinstitute.org:bsp.prod.sample:1D9WG, broadinstitute.org:bsp.prod.sample:1D9WH, broadinstitute.org:bsp.prod.sample:1D9WI, broadinstitute.org:bsp.prod.sample:1D9WJ, broadinstitute.org:bsp.prod.sample:1D9WK, broadinstitute.org:bsp.prod.sample:1D9WL
BI project name: C460
BI target set: whole_exome_agilent_1.1_refseq_plus_3_boosters
BI work request ID: 23276
Runs: 120 runs, 120M spots, 17.3G bases, 9.7Gb
Run# of Spots# of BasesSizePublished
SRR079107929,070133.8M76.7Mb2010-12-14
SRR0791091,111,266160M91.9Mb2010-12-14
SRR0791101,095,918157.8M91.4Mb2010-12-14
SRR079112901,990129.9M74.6Mb2010-12-14
SRR0791131,000,769144.1M83.3Mb2010-12-14
SRR0791161,025,140147.6M84.4Mb2010-12-14
SRR0791181,014,416146.1M83.1Mb2010-12-14
SRR0791201,035,315149.1M85.6Mb2010-12-14
SRR0791211,090,137157M89.3Mb2010-12-14
SRR079122982,869141.5M81.2Mb2010-12-14
SRR0791251,061,548152.9M87.2Mb2010-12-14
SRR079127939,224135.2M77.5Mb2010-12-14
SRR079128853,491122.9M70.5Mb2010-12-14
SRR0791301,061,214152.8M87.3Mb2010-12-14
SRR0791331,030,889148.4M85.2Mb2010-12-14
There are 105 omitted runs. See all runs in Run Selector.

#Member# of Spots# of Bases
1SRS074262 : tagged_293_ATTCTAGG8.8M1.3G
2SRS074263 : tagged_747_GTCCACAG7.4M1.1G
3SRS074271 : tagged_938_TTACGCAC7.7M1.1G
4SRS074283 : tagged_220_AGGTCGCA9M1.3G
5SRS074284 : tagged_924_TGTAATCA7.5M1.1G
6SRS074286 : tagged_934_TTAATCAG6.5M930.3M
7SRS074287 : tagged_498_CGTTACCA8.1M1.2G
8SRS074292 : tagged_800_TACTTAGC8M1.2G
9SRS074293 : tagged_534_CTGCGGAT8.2M1.2G
10SRS074295 : tagged_422_CCTACCAT8.7M1.2G
11SRS074296 : tagged_289_ATTATGTT8.1M1.2G
12SRS074298 : tagged_754_GTCTGATG7.2M1G
13SRS074299 : tagged_288_ATTATCAA7.8M1.1G
14SRS074301 : tagged_509_CTATGCGT8.3M1.2G
15SRS074302 : tagged_635_GCAGCCGT8.8M1.3G
16 : defaultn/an/a

ID:
40204

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